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Pdcd6ip programmed cell death 6 interacting protein [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113194259, updated on 15-Mar-2024

Summary

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Gene symbol
Pdcd6ip
Gene description
programmed cell death 6 interacting protein
See related
Ensembl:ENSUPAG00010004908
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020539899.1 (9532172..9608959)

NW_020539899.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit Tim23 pseudogene Neighboring gene cytoplasmic linker associated protein 2 Neighboring gene mitochondrial import receptor subunit TOM5 homolog pseudogene Neighboring gene 60S ribosomal protein L9 pseudogene Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020539899 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
programmed cell death 6-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020539899.1 Reference ASM342692v1

    Range
    9532172..9608959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026405278.1 → XP_026261063.1  programmed cell death 6-interacting protein isoform X1

    Conserved Domains (3) summary
    cd09235
    Location:365 → 703
    V_Alix; Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules
    cd09240
    Location:2 → 350
    BRO1_Alix; Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains
    cl25716
    Location:821 → 875
    Amelogenin

  2. XM_026405284.1 → XP_026261069.1  programmed cell death 6-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8D2GYR2
    Related
    ENSUPAP00010006115.1, ENSUPAT00010006999.1
    Conserved Domains (3) summary
    cd09235
    Location:360 → 698
    V_Alix; Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules
    cd09240
    Location:2 → 345
    BRO1_Alix; Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains
    cl25716
    Location:816 → 870
    Amelogenin
Nucleotide Protein
Heading Accession and Version

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