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Camk2d calcium/calmodulin dependent protein kinase II delta [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113183399, updated on 18-Sep-2024

Summary

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Gene symbol
Camk2d
Gene description
calcium/calmodulin dependent protein kinase II delta
See related
Ensembl:ENSUPAG00010012766
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020539959.1 (4401329..4697378)

NW_020539959.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B1 pseudogene Neighboring gene arylsulfatase family member J Neighboring gene ankyrin 2 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene 60S ribosomal protein L39 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020539959 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium/calmodulin-dependent protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium/calmodulin-dependent protein kinase type II subunit delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020539959.1 Reference ASM342692v1

    Range
    4401329..4697378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026389685.1 → XP_026245470.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X5

    Related
    ENSUPAP00010017210.1, ENSUPAT00010019622.1
    Conserved Domains (2) summary
    cd14086
    Location:12 → 303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:360 → 487
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain

  2. XM_026389683.1 → XP_026245468.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X3

    Conserved Domains (2) summary
    cd14086
    Location:12 → 303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:346 → 473
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain

  3. XM_026389684.1 → XP_026245469.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X4

    Conserved Domains (2) summary
    cd14086
    Location:12 → 303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:345 → 472
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain

  4. XM_026389681.1 → XP_026245466.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X1

    Related
    ENSUPAP00010017374.1, ENSUPAT00010019801.1
    Conserved Domains (2) summary
    cd14086
    Location:12 → 303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:360 → 487
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain

  5. XM_026389682.1 → XP_026245467.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X2

    UniProtKB/TrEMBL
    A0A8D2HNV2
    Related
    ENSUPAP00010017163.1, ENSUPAT00010019564.1
    Conserved Domains (2) summary
    cd14086
    Location:12 → 303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:359 → 486
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain

  6. XM_026389686.1 → XP_026245471.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X6

    Related
    ENSUPAP00010017231.1, ENSUPAT00010019644.1
    Conserved Domains (2) summary
    cd14086
    Location:12 → 303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:346 → 473
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
Nucleotide Protein
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