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Exosc5 exosome component 5 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113176563, updated on 11-Apr-2024

Summary

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Gene symbol
Exosc5
Gene description
exosome component 5
See related
Ensembl:ENSUPAG00010010628
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540761.1 (252756..261936, complement)

NW_020540761.1Genomic Context describing neighboring genes Neighboring gene B9 domain containing 2 Neighboring gene transmembrane protein 91 Neighboring gene lysM and putative peptidoglycan-binding domain-containing protein 1 pseudogene Neighboring gene branched chain keto acid dehydrogenase E1 subunit alpha Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540761 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP46

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540761.1 Reference ASM342692v1

    Range
    252756..261936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026381031.1 → XP_026236816.1  exosome complex component RRP46

    UniProtKB/TrEMBL
    A0A8D2HKJ4
    Related
    ENSUPAP00010013128.1, ENSUPAT00010015050.1
    Conserved Domains (1) summary
    cd11372
    Location:28 → 225
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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