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Trim36 tripartite motif containing 36 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113176535, updated on 15-Mar-2024

Summary

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Gene symbol
Trim36
Gene description
tripartite motif containing 36
See related
Ensembl:ENSUPAG00010010232
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540756.1 (3662..28545)

NW_020540756.1Genomic Context describing neighboring genes Neighboring gene histone H1.0-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540756 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540756.1 Reference ASM342692v1

    Range
    3662..28545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026381005.1 → XP_026236790.1  E3 ubiquitin-protein ligase TRIM36

    UniProtKB/TrEMBL
    A0A8D2HH72
    Related
    ENSUPAP00010012625.1, ENSUPAT00010014489.1
    Conserved Domains (4) summary
    smart00060
    Location:276 → 337
    FN3; Fibronectin type 3 domain
    cd00021
    Location:56 → 94
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd12894
    Location:361 → 563
    SPRY_PRY_TRIM36; PRY/SPRY domain in tripartite motif-containing protein 36 (TRIM36)
    cl25407
    Location:101 → 225
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
Nucleotide Protein
Heading Accession and Version

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