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tenm2a teneurin transmembrane protein 2a [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113034228, updated on 12-Sep-2024

Summary

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Gene symbol
tenm2a
Gene description
teneurin transmembrane protein 2a
See related
Ensembl:ENSACLG00000000110
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Also known as
tenm2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 2
Exon count:
41
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 2 NC_039303.1 (22878621..23109614, complement)

Chromosome 2 - NC_039303.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E binding protein 3, like Neighboring gene cysteine-rich and transmembrane domain-containing protein 1 Neighboring gene uncharacterized LOC113034285 Neighboring gene preproinsulin b Neighboring gene hyaluronan-mediated motility receptor (RHAMM)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039303.1 Chromosome 2 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
teneurin-2
Names
teneurin transmembrane protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039303.1 Reference fAstCal1.2 Primary Assembly

    Range
    22878621..23109614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026188681.1 → XP_026044466.1  teneurin-2 isoform X8

    UniProtKB/TrEMBL
    A0A3P8N6N5
    Conserved Domains (9) summary
    cd00054
    Location:681 → 704
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1235 → 1274
    NHL; NHL repeat [structural motif]
    pfam07974
    Location:584 → 606
    EGF_2; EGF-like domain
    cl18310
    Location:1206 → 1564
    NHL; NHL repeat unit of beta-propeller proteins
    pfam05593
    Location:1689 → 1725
    RHS_repeat; RHS Repeat
    pfam06484
    Location:10 → 378
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2692 → 2767
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    cl26067
    Location:671 → 789
    Keratin_B2; Keratin, high sulfur B2 protein
    cl27255
    Location:2399 → 2475
    RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]

  2. XM_026188674.1 → XP_026044459.1  teneurin-2 isoform X7

    UniProtKB/TrEMBL
    A0A3P8N6N5
    Conserved Domains (9) summary
    cd00054
    Location:681 → 704
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1244 → 1283
    NHL; NHL repeat [structural motif]
    pfam07974
    Location:584 → 606
    EGF_2; EGF-like domain
    cl18310
    Location:1215 → 1573
    NHL; NHL repeat unit of beta-propeller proteins
    pfam05593
    Location:1698 → 1734
    RHS_repeat; RHS Repeat
    pfam06484
    Location:10 → 378
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2701 → 2776
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    cl26067
    Location:671 → 789
    Keratin_B2; Keratin, high sulfur B2 protein
    cl27255
    Location:2408 → 2484
    RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]

  3. XM_026188666.1 → XP_026044451.1  teneurin-2 isoform X6

    UniProtKB/TrEMBL
    A0A3P8N6N5
    Conserved Domains (9) summary
    cd00054
    Location:688 → 711
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1251 → 1290
    NHL; NHL repeat [structural motif]
    pfam07974
    Location:591 → 613
    EGF_2; EGF-like domain
    cl18310
    Location:1222 → 1580
    NHL; NHL repeat unit of beta-propeller proteins
    pfam05593
    Location:1705 → 1741
    RHS_repeat; RHS Repeat
    pfam06484
    Location:10 → 378
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2708 → 2783
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    cl26067
    Location:678 → 796
    Keratin_B2; Keratin, high sulfur B2 protein
    cl27255
    Location:2415 → 2491
    RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]

  4. XM_026188662.1 → XP_026044447.1  teneurin-2 isoform X5

    UniProtKB/TrEMBL
    A0A3P8N6N5
    Related
    ENSACLP00000000424.1, ENSACLT00000000437.1

  5. XM_026188639.1 → XP_026044424.1  teneurin-2 isoform X2

    UniProtKB/TrEMBL
    A0A3P8N6J5

  6. XM_026188689.1 → XP_026044474.1  teneurin-2 isoform X9

    UniProtKB/TrEMBL
    A0A3P8N6J5
    Related
    ENSACLP00000000378.1, ENSACLT00000000392.1

  7. XM_026188645.1 → XP_026044430.1  teneurin-2 isoform X3

    UniProtKB/TrEMBL
    A0A3P8N6J5

  8. XM_026188654.1 → XP_026044439.1  teneurin-2 isoform X4

    UniProtKB/TrEMBL
    A0A3P8N6J5

  9. XM_026188631.1 → XP_026044416.1  teneurin-2 isoform X1

    UniProtKB/TrEMBL
    A0A3P8N6J5

  10. XM_026188705.1 → XP_026044490.1  teneurin-2 isoform X11

    UniProtKB/TrEMBL
    A0A3P8N6X5
    Related
    ENSACLP00000000507.1, ENSACLT00000000523.1
    Conserved Domains (8) summary
    cd05819
    Location:1035 → 1074
    NHL; NHL repeat [structural motif]
    pfam07974
    Location:375 → 397
    EGF_2; EGF-like domain
    cl18310
    Location:1006 → 1364
    NHL; NHL repeat unit of beta-propeller proteins
    pfam05593
    Location:1489 → 1525
    RHS_repeat; RHS Repeat
    pfam06484
    Location:23 → 162
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2492 → 2567
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    cl26067
    Location:462 → 580
    Keratin_B2; Keratin, high sulfur B2 protein
    cl27255
    Location:2199 → 2275
    RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]

  11. XM_026188697.1 → XP_026044482.1  teneurin-2 isoform X10

    UniProtKB/TrEMBL
    A0A3P8N702
    Related
    ENSACLP00000000535.1, ENSACLT00000000550.1
    Conserved Domains (8) summary
    cd05819
    Location:1104 → 1143
    NHL; NHL repeat [structural motif]
    pfam07974
    Location:444 → 466
    EGF_2; EGF-like domain
    cl18310
    Location:1075 → 1433
    NHL; NHL repeat unit of beta-propeller proteins
    pfam05593
    Location:1558 → 1594
    RHS_repeat; RHS Repeat
    pfam06484
    Location:61 → 231
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2561 → 2636
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    cl26067
    Location:531 → 649
    Keratin_B2; Keratin, high sulfur B2 protein
    cl27255
    Location:2268 → 2344
    RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
Nucleotide Protein
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