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snx25 sorting nexin 25 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113033001, updated on 15-Mar-2024

Summary

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Gene symbol
snx25
Gene description
sorting nexin 25
See related
Ensembl:ENSACLG00000020812
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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See snx25 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 2 NC_039303.1 (19202300..19225244)

Chromosome 2 - NC_039303.1Genomic Context describing neighboring genes Neighboring gene calnexin-like Neighboring gene fibrinogen-like 1 Neighboring gene centrosome and spindle pole associated protein 1-like Neighboring gene uncharacterized LOC113029106

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039303.1 Chromosome 2 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039303.1 Reference fAstCal1.2 Primary Assembly

    Range
    19202300..19225244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026186241.1 → XP_026042026.1  sorting nexin-25 isoform X3

  2. XM_026186224.1 → XP_026042009.1  sorting nexin-25 isoform X1

    UniProtKB/TrEMBL
    A0A3P8QP94, A0A3P8QPF1
    Related
    ENSACLP00000030824.1, ENSACLT00000031541.1

  3. XM_026186234.1 → XP_026042019.1  sorting nexin-25 isoform X2

    UniProtKB/TrEMBL
    A0A3P8QPF1
    Related
    ENSACLP00000030872.1, ENSACLT00000031589.1
    Conserved Domains (4) summary
    cd06878
    Location:644 → 766
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:137 → 297
    PXA; PXA domain
    pfam08628
    Location:841 → 944
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:433 → 541
    RGS; Regulator of G protein signaling (RGS) domain superfamily
Nucleotide Protein
Heading Accession and Version

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