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klf6a Kruppel-like factor 6a [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113029248, updated on 15-Mar-2024

Summary

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Gene symbol
klf6a
Gene description
Kruppel-like factor 6a
See related
Ensembl:ENSACLG00000012379
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Also known as
klf6
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 9 NC_039310.1 (8509436..8513767)

Chromosome 9 - NC_039310.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC113029229 Neighboring gene uncharacterized LOC113029772 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene phosphofructokinase, platelet a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039310.1 Chromosome 9 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Krueppel-like factor 6
Names
Kruppel like factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039310.1 Reference fAstCal1.2 Primary Assembly

    Range
    8509436..8513767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026180023.1 → XP_026035808.1  Krueppel-like factor 6

    UniProtKB/TrEMBL
    A0A3P8PM77
    Related
    ENSACLP00000018112.1, ENSACLT00000018543.1
    Conserved Domains (5) summary
    COG5048
    Location:198 → 265
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:205 → 224
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:260 → 282
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:246 → 271
    zf-H2C2_2; Zinc-finger double domain
    cd21586
    Location:2 → 201
    KLF6_N; N-terminal domain of Kruppel-like factor 6
Nucleotide Protein
Heading Accession and Version

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