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klf6a Kruppel-like factor 6a [ Danio rerio (zebrafish) ]

Gene ID: 280650, updated on 22-Nov-2020

Summary

Official Symbol
klf6aprovided by ZNC
Official Full Name
Kruppel-like factor 6aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-021115-9
See related
Ensembl:ENSDARG00000029072
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cop; klf; klf6; cb538; copeb; wu:fb76d04; wu:fb92h03; wu:fe26g06; wu:fk78f12
Orthologs

Genomic context

See klf6a in Genome Data Viewer
Location:
chromosome: 24
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (4141479..4148914, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (4109692..4117127, complement)
103 previous assembly Zv9 (GCF_000002035.4) 24 NC_007135.5 (4219199..4226671, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene adenosine deaminase RNA specific B2 (inactive) Neighboring gene phosphofructokinase, platelet a Neighboring gene cyclin Y Neighboring gene gap junction protein delta 4

Genomic regions, transcripts, and products

Bibliography

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
digestive tract development IMP
Inferred from Mutant Phenotype
more info
PubMed 
erythrocyte maturation IMP
Inferred from Mutant Phenotype
more info
PubMed 
liver development IMP
Inferred from Mutant Phenotype
more info
PubMed 
optic nerve formation IDA
Inferred from Direct Assay
more info
PubMed 
organ growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
pancreas development IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of hematopoietic stem cell migration IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of hematopoietic stem cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of hematopoietic stem cell proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of hematopoietic stem cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromatin IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Krueppel-like factor 6a
Names
core promoter element binding protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201461.2NP_958869.2  Krueppel-like factor 6a

    Status: VALIDATED

    Source sequence(s)
    CT704401, CT734412, CU462914
    UniProtKB/TrEMBL
    F1R7F0
    Related
    ENSDARP00000037789.5, ENSDART00000033494.6
    Conserved Domains (3) summary
    COG5048
    Location:171265
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:205224
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:246271
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    4141479..4148914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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