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tefm transcription elongation factor, mitochondrial [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113024030, updated on 15-Mar-2024

Summary

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Gene symbol
tefm
Gene description
transcription elongation factor, mitochondrial
See related
Ensembl:ENSACLG00000006693
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 6 NC_039307.1 (16466451..16469153)

Chromosome 6 - NC_039307.1Genomic Context describing neighboring genes Neighboring gene ras homolog family member T1 Neighboring gene arf-GAP with dual PH domain-containing protein 2-like Neighboring gene ATPase family AAA domain containing 5b Neighboring gene SUZ12 polycomb repressive complex 2 subunit b Neighboring gene UTP6 small subunit processome component Neighboring gene uncharacterized LOC113024032

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039307.1 Chromosome 6 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA polymerase processivity factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by mitochondrial RNA polymerase IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial nucleoid IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039307.1 Reference fAstCal1.2 Primary Assembly

    Range
    16466451..16469153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026170606.1 → XP_026026391.1  transcription elongation factor, mitochondrial

    UniProtKB/TrEMBL
    A0A3P8NYI1
    Related
    ENSACLP00000009798.1, ENSACLT00000010023.1
    Conserved Domains (1) summary
    cl22429
    Location:91 → 133
    HHH_5; Helix-hairpin-helix domain
Nucleotide Protein
Heading Accession and Version

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