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rhobtb3 Rho related BTB domain containing 3 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113022776, updated on 15-Mar-2024

Summary

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Gene symbol
rhobtb3
Gene description
Rho related BTB domain containing 3
See related
Ensembl:ENSACLG00000012453
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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See rhobtb3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 5 NC_039306.1 (26909154..26940470)

Chromosome 5 - NC_039306.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2R 2 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 2 Neighboring gene Rieske (Fe-S) domain containing Neighboring gene glutaredoxin (thioltransferase) Neighboring gene elongation factor for RNA polymerase II 2 Neighboring gene uncharacterized LOC113022781 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039306.1 Chromosome 5 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho-related BTB domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039306.1 Reference fAstCal1.2 Primary Assembly

    Range
    26909154..26940470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026168557.1 → XP_026024342.1  rho-related BTB domain-containing protein 3 isoform X2

  2. XM_026168558.1 → XP_026024343.1  rho-related BTB domain-containing protein 3 isoform X3

    Conserved Domains (2) summary
    cl38908
    Location:241 → 406
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    cl38936
    Location:40 → 136
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_026168556.1 → XP_026024341.1  rho-related BTB domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A3P8PMF2
    Related
    ENSACLP00000018211.1, ENSACLT00000018642.1
    Conserved Domains (4) summary
    cd18360
    Location:420 → 526
    BTB2_POZ_RHOBTB3; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Rho-related BTB domain-containing protein 3 (RhoBTB3)
    cd18532
    Location:536 → 619
    BACK_RHOBTB3; BACK (BTB and C-terminal Kelch) domain found in Rho-related BTB domain-containing protein 3 (RhoBTB3)
    cl38908
    Location:241 → 406
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    cl38936
    Location:40 → 136
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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