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PTBP1 polypyrimidine tract binding protein 1 [ Dromaius novaehollandiae (emu) ]

Gene ID: 112988066, updated on 19-Apr-2024

Summary

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Gene symbol
PTBP1
Gene description
polypyrimidine tract binding protein 1
See related
Ensembl:ENSDNVG00000012742
Gene type
protein coding
RefSeq status
MODEL
Organism
Dromaius novaehollandiae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) 25 NC_088122.1 (638810..671157)
100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020453392.1 (307633..339984, complement)

Chromosome 25 - NC_088122.1Genomic Context describing neighboring genes Neighboring gene mitotic spindle positioning Neighboring gene uncharacterized protein KIAA1958-like Neighboring gene complement factor D Neighboring gene phospholipid phosphatase related 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDroNov1.hap1

Genomic

  1. NC_088122.1 Reference bDroNov1.hap1

    Range
    638810..671157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026108286.2 → XP_025964071.1  polypyrimidine tract-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A7K9BF26
    Conserved Domains (1) summary
    TIGR01649
    Location:27 → 527
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_026108285.2 → XP_025964070.1  polypyrimidine tract-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C4K5B2, A0A8C4PA87
    Related
    ENSDNVP00000018215.1
    Conserved Domains (1) summary
    TIGR01649
    Location:57 → 557
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
Nucleotide Protein
Heading Accession and Version

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