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NFIB nuclear factor I B [ Dromaius novaehollandiae (emu) ]

Gene ID: 112981883, updated on 6-Jun-2024

Summary

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Gene symbol
NFIB
Gene description
nuclear factor I B
See related
Ensembl:ENSDNVG00000004913
Gene type
protein coding
RefSeq status
MODEL
Organism
Dromaius novaehollandiae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Z
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) Z NC_088132.1 (20448663..20625923, complement)
100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020452316.1 (5085133..5262066)

Chromosome Z - NC_088132.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112981870 Neighboring gene uncharacterized LOC135324666 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene transfer RNA histidin (anticodon GUG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor 1 B-type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDroNov1.hap1

Genomic

  1. NC_088132.1 Reference bDroNov1.hap1

    Range
    20448663..20625923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026097877.2 → XP_025953662.1  nuclear factor 1 B-type isoform X8

    UniProtKB/TrEMBL
    A0A8C4JDI7
    Related
    ENSDNVP00000006860.1
    Conserved Domains (4) summary
    PRK15127
    Location:384 → 474
    PRK15127; multidrug efflux RND transporter permease subunit AcrB
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:209 → 415
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  2. XM_026097876.2 → XP_025953661.1  nuclear factor 1 B-type isoform X7

    UniProtKB/TrEMBL
    A0A8C4JB36
    Conserved Domains (3) summary
    pfam00859
    Location:209 → 492
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  3. XM_026097873.2 → XP_025953658.1  nuclear factor 1 B-type isoform X2

    UniProtKB/TrEMBL
    A0A8C4JB36, A0A8C4JCD1
    Related
    ENSDNVP00000006856.1
    Conserved Domains (3) summary
    pfam00859
    Location:209 → 488
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  4. XM_064501530.1 → XP_064357600.1  nuclear factor 1 B-type isoform X6

    UniProtKB/TrEMBL
    A0A8C4P523

  5. XM_026097875.2 → XP_025953660.1  nuclear factor 1 B-type isoform X5

    UniProtKB/TrEMBL
    A0A8C4JB36
    Conserved Domains (3) summary
    pfam00859
    Location:209 → 501
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  6. XM_026097872.2 → XP_025953657.1  nuclear factor 1 B-type isoform X1

    UniProtKB/TrEMBL
    A0A8C4JB36
    Conserved Domains (3) summary
    pfam00859
    Location:209 → 497
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  7. XM_026097878.2 → XP_025953663.1  nuclear factor 1 B-type isoform X9

    UniProtKB/TrEMBL
    A0A8C4P523
    Conserved Domains (3) summary
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:209 → 414
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  8. XM_026097874.2 → XP_025953659.1  nuclear factor 1 B-type isoform X3

    UniProtKB/TrEMBL
    A0A8C4JB36
    Related
    ENSDNVP00000006876.1
    Conserved Domains (3) summary
    pfam00859
    Location:200 → 488
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:1 → 38
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:60 → 164
    MH1; N-terminal Mad Homology 1 (MH1) domain

  9. XM_064501529.1 → XP_064357599.1  nuclear factor 1 B-type isoform X4

    UniProtKB/TrEMBL
    A0A8C4JB36
Nucleotide Protein
Heading Accession and Version

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