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SYNPO2 synaptopodin 2 [ Dromaius novaehollandiae (emu) ]

Gene ID: 112980887, updated on 19-Apr-2024

Summary

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Gene symbol
SYNPO2
Gene description
synaptopodin 2
See related
Ensembl:ENSDNVG00000007610
Gene type
protein coding
RefSeq status
MODEL
Organism
Dromaius novaehollandiae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) 4 NC_088101.1 (25683856..25783045)
100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020452039.1 (1247040..1346210, complement)

Chromosome 4 - NC_088101.1Genomic Context describing neighboring genes Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit Neighboring gene SEC24 homolog D, COPII coat complex component Neighboring gene uncharacterized LOC112980892 Neighboring gene myozenin 2 Neighboring gene ubiquitin specific peptidase 53

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptopodin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDroNov1.hap1

Genomic

  1. NC_088101.1 Reference bDroNov1.hap1

    Range
    25683856..25783045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026096097.2 → XP_025951882.1  synaptopodin-2

    UniProtKB/TrEMBL
    A0A8C4JMT2
    Related
    ENSDNVP00000010774.1
    Conserved Domains (2) summary
    cd00992
    Location:7 → 85
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl26464
    Location:758 → 1191
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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