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SMO smoothened, frizzled class receptor [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112978110, updated on 15-Mar-2024

Summary

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Gene symbol
SMO
Gene description
smoothened, frizzled class receptor
See related
Ensembl:ENSARWG00000014691
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020451204.1 (142723..147439)

NW_020451204.1Genomic Context describing neighboring genes Neighboring gene transportin 3 Neighboring gene tetraspanin 33 Neighboring gene adenosylhomocysteinase like 2 Neighboring gene striatin interacting protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020451204 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables patched binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in commissural neuron axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
smoothened homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020451204.1 Reference aptRow1

    Range
    142723..147439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026091267.1 → XP_025947052.1  smoothened homolog

    Related
    ENSARWP00000021513.1, ENSARWT00000024396.1
    Conserved Domains (3) summary
    cd15030
    Location:90 → 420
    7tmF_SMO_homolog; class F smoothened family membrane region, a homolog of frizzled receptors
    cl02447
    Location:1 → 66
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
    cl26464
    Location:498 → 613
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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