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CNTN3 contactin 3 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112970519, updated on 15-Mar-2024

Summary

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Gene symbol
CNTN3
Gene description
contactin 3
See related
Ensembl:ENSARWG00000018721
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See CNTN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020450529.1 (4630400..4717592)

NW_020450529.1Genomic Context describing neighboring genes Neighboring gene contactin 6 Neighboring gene cell adhesion molecule L1 like Neighboring gene uncharacterized LOC112970465 Neighboring gene PDZ domain containing ring finger 3 Neighboring gene protein phosphatase 4 regulatory subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020450529 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020450529.1 Reference aptRow1

    Range
    4630400..4717592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026075004.1 → XP_025930789.1  contactin-3

    Related
    ENSARWP00000027721.1, ENSARWT00000031342.1
    Conserved Domains (4) summary
    smart00060
    Location:892 → 972
    FN3; Fibronectin type 3 domain
    cd00063
    Location:587 → 684
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04968
    Location:216 → 304
    Ig3_Contactin; Third immunoglobulin (Ig) domain of contactin
    cl11960
    Location:309 → 392
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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