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CNTN3 contactin 3 [ Homo sapiens (human) ]

Gene ID: 5067, updated on 8-Dec-2018

Summary

Official Symbol
CNTN3provided by HGNC
Official Full Name
contactin 3provided by HGNC
Primary source
HGNC:HGNC:2173
See related
Ensembl:ENSG00000113805 MIM:601325
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCS; PANG; BIG-1
Expression
Broad expression in brain (RPKM 2.7), prostate (RPKM 1.8) and 18 other tissues See more
Orthologs

Genomic context

See CNTN3 in Genome Data Viewer
Location:
3p12.3
Exon count:
27
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 3 NC_000003.12 (74262568..74614448, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (74311719..74663587, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene heat shock protein 90 alpha family class B member 5, pseudogene Neighboring gene aldo-keto reductase family 1 member B1 pseudogene 2 Neighboring gene uncharacterized LOC105377166 Neighboring gene uncharacterized LOC105377167

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study of smoking behaviours among Bangladeshi adults.
NHGRI GWA Catalog
The genetic architecture of economic and political preferences.
NHGRI GWA Catalog

Pathways from BioSystems

General gene information

Markers

Homology

Clone Names

  • KIAA1496

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
anchored component of membrane IEA
Inferred from Electronic Annotation
more info
 
extracellular region TAS
Traceable Author Statement
more info
 
plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
contactin-3
Names
brain-derived immunoglobulin superfamily protein 1
contactin 3 (plasmacytoma associated)
plasmacytoma-associated neuronal glycoprotein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020872.2NP_065923.1  contactin-3 precursor

    See identical proteins and their annotated locations for NP_065923.1

    Status: VALIDATED

    Source sequence(s)
    AC016950, AC024222, AL512746, BC150608
    Consensus CDS
    CCDS33790.1
    UniProtKB/Swiss-Prot
    Q9P232
    Related
    ENSP00000263665.6, ENST00000263665.6
    Conserved Domains (4) summary
    smart00410
    Location:419496
    IG_like; Immunoglobulin like
    cd00063
    Location:598695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:318403
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:227315
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p12 Primary Assembly

    Range
    74262568..74614448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005264757.3XP_005264814.1  contactin-3 isoform X1

    See identical proteins and their annotated locations for XP_005264814.1

    UniProtKB/Swiss-Prot
    Q9P232
    Conserved Domains (4) summary
    smart00410
    Location:419496
    IG_like; Immunoglobulin like
    cd00063
    Location:598695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:318403
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:227315
    Ig; Immunoglobulin domain
  2. XM_017006507.1XP_016861996.1  contactin-3 isoform X1

    UniProtKB/Swiss-Prot
    Q9P232
    Conserved Domains (4) summary
    smart00410
    Location:419496
    IG_like; Immunoglobulin like
    cd00063
    Location:598695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:318403
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:227315
    Ig; Immunoglobulin domain
  3. XM_011533768.2XP_011532070.1  contactin-3 isoform X2

    Conserved Domains (4) summary
    smart00410
    Location:419496
    IG_like; Immunoglobulin like
    cd00063
    Location:598695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:318403
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:227315
    Ig; Immunoglobulin domain
  4. XM_017006508.1XP_016861997.1  contactin-3 isoform X3

  5. XM_017006509.1XP_016861998.1  contactin-3 isoform X4

    Conserved Domains (3) summary
    smart00410
    Location:64152
    IG_like; Immunoglobulin like
    cd00063
    Location:156253
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:73156
    Ig; Immunoglobulin domain
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