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FGD5 FYVE, RhoGEF and PH domain containing 5 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112970458, updated on 15-Mar-2024

Summary

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Gene symbol
FGD5
Gene description
FYVE, RhoGEF and PH domain containing 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020450529.1 (81483..203976)

NW_020450529.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112970495 Neighboring gene nuclear receptor subfamily 2 group C member 2 Neighboring gene mitochondrial ribosomal protein S25 Neighboring gene rabenosyn, RAB effector

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020450529 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FYVE, RhoGEF and PH domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020450529.1 Reference aptRow1

    Range
    81483..203976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026074893.1 → XP_025930678.1  FYVE, RhoGEF and PH domain-containing protein 5

    Conserved Domains (5) summary
    cd13237
    Location:1482 → 1570
    PH2_FGD5_FGD6; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 pleckstrin homology (PH) domain, C-terminus
    cd15792
    Location:1226 → 1348
    PH1_FGD5; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia protein 5, N-terminal Pleckstrin Homology (PH) domain
    cd15742
    Location:1362 → 1428
    FYVE_FGD5; FYVE-like domain found in FYVE, RhoGEF and PH domain-containing protein 5 (FGD5) and similar proteins
    pfam00621
    Location:1024 → 1207
    RhoGEF; RhoGEF domain
    cl26761
    Location:87 → 649
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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