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WDR4 WD repeat domain 4 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112968431, updated on 15-Mar-2024

Summary

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Gene symbol
WDR4
Gene description
WD repeat domain 4
See related
Ensembl:ENSARWG00000017789
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020449608.1 (716668..741033)

NW_020449608.1Genomic Context describing neighboring genes Neighboring gene PBX/knotted 1 homeobox 1 Neighboring gene NADH:ubiquinone oxidoreductase subunit V3 Neighboring gene phosphodiesterase 9A Neighboring gene uncharacterized LOC112968442

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020449608 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine(46)-N7)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA (guanine-N7)-methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of tRNA methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020449608.1 Reference aptRow1

    Range
    716668..741033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026070682.1 → XP_025926467.1  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1

    Conserved Domains (2) summary
    COG2319
    Location:26 → 256
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:30 → 66
    7WD40; WD40 repeat [structural motif]

  2. XM_026070684.1 → XP_025926469.1  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1

    Conserved Domains (2) summary
    COG2319
    Location:26 → 256
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:30 → 66
    7WD40; WD40 repeat [structural motif]

  3. XM_026070681.1 → XP_025926466.1  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1

    Related
    ENSARWP00000026214.1, ENSARWT00000029662.1
    Conserved Domains (2) summary
    COG2319
    Location:26 → 256
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:30 → 66
    7WD40; WD40 repeat [structural motif]

  4. XM_026070683.1 → XP_025926468.1  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1

    Conserved Domains (2) summary
    COG2319
    Location:26 → 256
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:30 → 66
    7WD40; WD40 repeat [structural motif]

  5. XM_026070685.1 → XP_025926470.1  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X2

    Conserved Domains (2) summary
    COG2319
    Location:26 → 191
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:30 → 66
    7WD40; WD40 repeat [structural motif]

  6. XM_026070686.1 → XP_025926471.1  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X3

    Conserved Domains (2) summary
    sd00039
    Location:18 → 58
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:68 → 142
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  7. XM_026070680.1 → XP_025926465.1  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1

    Conserved Domains (2) summary
    COG2319
    Location:26 → 256
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:30 → 66
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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