U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATXN2 ataxin 2 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112963350, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ATXN2
Gene description
ataxin 2
See related
Ensembl:ENSARWG00000011746
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447952.1 (1669366..1716508)

NW_020447952.1Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 2 family member Neighboring gene acyl-CoA dehydrogenase family member 10 Neighboring gene BRCA1 associated protein Neighboring gene uncharacterized LOC112963371

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020447952 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ataxin-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020447952.1 Reference aptRow1

    Range
    1669366..1716508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026060287.1 → XP_025916072.1  ataxin-2 isoform X1

    Conserved Domains (5) summary
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:673 → 921
    PAT1; Topoisomerase II-associated protein PAT1
    cl25836
    Location:449 → 540
    Retinal; Retinal protein
    cl28033
    Location:275 → 558
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_026060289.1 → XP_025916074.1  ataxin-2 isoform X3

    Conserved Domains (6) summary
    pfam07145
    Location:675 → 691
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:693 → 884
    PAT1; Topoisomerase II-associated protein PAT1
    cl25836
    Location:449 → 540
    Retinal; Retinal protein
    cl26464
    Location:339 → 809
    Atrophin-1; Atrophin-1 family

  3. XM_026060295.1 → XP_025916080.1  ataxin-2 isoform X9

    Conserved Domains (4) summary
    pfam07145
    Location:632 → 648
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl26464
    Location:647 → 1017
    Atrophin-1; Atrophin-1 family

  4. XM_026060293.1 → XP_025916078.1  ataxin-2 isoform X7

    Conserved Domains (5) summary
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:766 → 1047
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:336 → 505
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:436 → 865
    Atrophin-1; Atrophin-1 family

  5. XM_026060294.1 → XP_025916079.1  ataxin-2 isoform X8

    Conserved Domains (3) summary
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl26464
    Location:336 → 770
    Atrophin-1; Atrophin-1 family

  6. XM_026060296.1 → XP_025916081.1  ataxin-2 isoform X10

    Conserved Domains (5) summary
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:706 → 987
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:379 → 805
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:263 → 484
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  7. XM_026060299.1 → XP_025916084.1  ataxin-2 isoform X12

    Conserved Domains (5) summary
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam10428
    Location:291 → 419
    SOG2; RAM signalling pathway protein
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:696 → 977
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:366 → 795
    Atrophin-1; Atrophin-1 family

  8. XM_026060288.1 → XP_025916073.1  ataxin-2 isoform X2

    Related
    ENSARWP00000017917.1, ENSARWT00000020357.1
    Conserved Domains (5) summary
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:673 → 921
    PAT1; Topoisomerase II-associated protein PAT1
    cl25836
    Location:449 → 540
    Retinal; Retinal protein
    cl26464
    Location:334 → 811
    Atrophin-1; Atrophin-1 family

  9. XM_026060300.1 → XP_025916085.1  ataxin-2 isoform X13

    Conserved Domains (4) summary
    pfam07145
    Location:591 → 607
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl26464
    Location:606 → 976
    Atrophin-1; Atrophin-1 family

  10. XM_026060301.1 → XP_025916086.1  ataxin-2 isoform X14

    Conserved Domains (4) summary
    pfam06741
    Location:177 → 238
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:665 → 946
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:316 → 764
    Atrophin-1; Atrophin-1 family

  11. XM_026060290.1 → XP_025916075.1  ataxin-2 isoform X4

    Conserved Domains (5) summary
    pfam06741
    Location:172 → 233
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:668 → 916
    PAT1; Topoisomerase II-associated protein PAT1
    cl25836
    Location:444 → 535
    Retinal; Retinal protein
    cl28033
    Location:270 → 553
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  12. XM_026060291.1 → XP_025916076.1  ataxin-2 isoform X5

    Conserved Domains (6) summary
    pfam07145
    Location:670 → 686
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:172 → 233
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:688 → 879
    PAT1; Topoisomerase II-associated protein PAT1
    cl25836
    Location:444 → 535
    Retinal; Retinal protein
    cl26464
    Location:334 → 804
    Atrophin-1; Atrophin-1 family

  13. XM_026060297.1 → XP_025916082.1  ataxin-2 isoform X11

    Conserved Domains (5) summary
    pfam06741
    Location:172 → 233
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:701 → 982
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:374 → 800
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:258 → 479
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  14. XM_026060302.1 → XP_025916087.1  ataxin-2 isoform X15

    Related
    ENSARWP00000017918.1, ENSARWT00000020358.1
    Conserved Domains (5) summary
    pfam06741
    Location:172 → 233
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:668 → 916
    PAT1; Topoisomerase II-associated protein PAT1
    cl25836
    Location:444 → 535
    Retinal; Retinal protein
    cl26464
    Location:329 → 806
    Atrophin-1; Atrophin-1 family

  15. XM_026060292.1 → XP_025916077.1  ataxin-2 isoform X6

    Related
    ENSARWP00000017932.1, ENSARWT00000020373.1
    Conserved Domains (5) summary
    pfam06741
    Location:172 → 233
    LsmAD; LsmAD domain
    pfam14438
    Location:31 → 104
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:688 → 879
    PAT1; Topoisomerase II-associated protein PAT1
    cl25836
    Location:444 → 535
    Retinal; Retinal protein
    cl26464
    Location:334 → 804
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.