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TTC39C tetratricopeptide repeat domain 39C [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112962460, updated on 15-Mar-2024

Summary

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Gene symbol
TTC39C
Gene description
tetratricopeptide repeat domain 39C
See related
Ensembl:ENSARWG00000013671
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447741.1 (1808160..1847482)

NW_020447741.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 29 Neighboring gene laminin subunit alpha 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020447741 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in otolith morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 39C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020447741.1 Reference aptRow1

    Range
    1808160..1847482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026058641.1 → XP_025914426.1  tetratricopeptide repeat protein 39C isoform X3

    Conserved Domains (1) summary
    pfam10300
    Location:1 → 437
    DUF3808; Protein of unknown function (DUF3808)

  2. XM_026058640.1 → XP_025914425.1  tetratricopeptide repeat protein 39C isoform X2

    Related
    ENSARWP00000019956.1, ENSARWT00000022650.1
    Conserved Domains (1) summary
    pfam10300
    Location:27 → 491
    DUF3808; Protein of unknown function (DUF3808)

  3. XM_026058639.1 → XP_025914424.1  tetratricopeptide repeat protein 39C isoform X1

    Conserved Domains (1) summary
    pfam10300
    Location:27 → 535
    DUF3808; Protein of unknown function (DUF3808)

  4. XM_026058642.1 → XP_025914427.1  tetratricopeptide repeat protein 39C isoform X3

    Related
    ENSARWP00000019960.1, ENSARWT00000022654.1
    Conserved Domains (1) summary
    pfam10300
    Location:1 → 437
    DUF3808; Protein of unknown function (DUF3808)

  5. XM_026058643.1 → XP_025914428.1  tetratricopeptide repeat protein 39C isoform X4

    Conserved Domains (1) summary
    pfam10300
    Location:1 → 181
    DUF3808; Protein of unknown function (DUF3808)
Nucleotide Protein
Heading Accession and Version

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