U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NBR1 NBR1 autophagy cargo receptor [ Nothoprocta perdicaria ]

Gene ID: 112960165, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
NBR1
Gene description
NBR1 autophagy cargo receptor
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020454328.1 (1594698..1612295)

NW_020454328.1Genomic Context describing neighboring genes Neighboring gene Rho family GTPase 2 Neighboring gene BRCA1 DNA repair associated Neighboring gene transmembrane protein 106A Neighboring gene DEAH-box helicase 8

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020454328 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
next to BRCA1 gene 1 protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020454328.1 Reference notPer1

    Range
    1594698..1612295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026054363.1 → XP_025910148.1  next to BRCA1 gene 1 protein isoform X3

    Conserved Domains (3) summary
    cd06396
    Location:5 → 85
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:223 → 267
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    pfam16158
    Location:382 → 481
    N_BRCA1_IG; Ig-like domain from next to BRCA1 gene

  2. XM_026054361.1 → XP_025910146.1  next to BRCA1 gene 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A8C6ZI93
    Conserved Domains (4) summary
    cd06396
    Location:5 → 85
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:223 → 267
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cd14319
    Location:959 → 997
    UBA_NBR1; UBA domain of next to BRCA1 gene 1 protein (NBR1) and similar proteins
    pfam16158
    Location:382 → 481
    N_BRCA1_IG; Ig-like domain from next to BRCA1 gene

  3. XM_026054362.1 → XP_025910147.1  next to BRCA1 gene 1 protein isoform X2

    UniProtKB/TrEMBL
    A0A8C6ZI93
    Conserved Domains (4) summary
    cd06396
    Location:5 → 85
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:223 → 267
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cd14319
    Location:958 → 996
    UBA_NBR1; UBA domain of next to BRCA1 gene 1 protein (NBR1) and similar proteins
    pfam16158
    Location:382 → 481
    N_BRCA1_IG; Ig-like domain from next to BRCA1 gene

  4. XM_026054364.1 → XP_025910149.1  next to BRCA1 gene 1 protein isoform X4

    UniProtKB/TrEMBL
    A0A8C6ZQ33
    Conserved Domains (3) summary
    cd06396
    Location:5 → 85
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:223 → 267
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    pfam16158
    Location:382 → 481
    N_BRCA1_IG; Ig-like domain from next to BRCA1 gene
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.