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IKZF5 IKAROS family zinc finger 5 [ Nothoprocta perdicaria ]

Gene ID: 112947792, updated on 15-Mar-2024

Summary

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Gene symbol
IKZF5
Gene description
IKAROS family zinc finger 5
See related
Ensembl:ENSNPEG00000012556
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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See IKZF5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455474.1 (976312..986403)

NW_020455474.1Genomic Context describing neighboring genes Neighboring gene H6 family homeobox 3 Neighboring gene acyl-CoA dehydrogenase short/branched chain Neighboring gene disintegrin and metalloproteinase domain-containing protein 9-like Neighboring gene phosphoseryl-tRNA kinase Neighboring gene chromosome unknown C10orf88 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020455474 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein Pegasus

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020455474.1 Reference notPer1

    Range
    976312..986403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026039931.1 → XP_025895716.1  zinc finger protein Pegasus isoform X1

    UniProtKB/TrEMBL
    A0A8C6ZQ00
    Related
    ENSNPEP00000016867.1, ENSNPET00000017279.1
    Conserved Domains (4) summary
    sd00017
    Location:84 → 104
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:124 → 148
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:138 → 162
    zf-H2C2_5; C2H2-type zinc-finger domain
    cl25496
    Location:257 → 362
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_026039932.1 → XP_025895717.1  zinc finger protein Pegasus isoform X2

    Conserved Domains (4) summary
    sd00017
    Location:51 → 71
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:63 → 87
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:77 → 101
    zf-H2C2_5; C2H2-type zinc-finger domain
    cl25496
    Location:196 → 301
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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