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SDCBP syndecan binding protein [ Vulpes vulpes (red fox) ]

Gene ID: 112929635, updated on 15-Mar-2024

Summary

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Gene symbol
SDCBP
Gene description
syndecan binding protein
See related
Ensembl:ENSVVUG00000017912
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See SDCBP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356438.1 (9114717..9133201)

NW_020356438.1Genomic Context describing neighboring genes Neighboring gene UBX domain protein 2B Neighboring gene cholesterol 7-alpha-monooxygenase Neighboring gene ATP synthase subunit g, mitochondrial pseudogene Neighboring gene neutral sphingomyelinase activation associated factor Neighboring gene rRNA-processing protein FCF1 homolog pseudogene Neighboring gene thymocyte selection associated high mobility group box

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356438 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables syndecan binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356438.1 Reference VulVul2.2 Primary Assembly

    Range
    9114717..9133201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026011790.1 → XP_025867575.1  syntenin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7UJR7
    Conserved Domains (1) summary
    cd00992
    Location:112 → 191
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_026011799.1 → XP_025867584.1  syntenin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7SVB1
    Related
    ENSVVUP00000024516.1, ENSVVUT00000032410.1
    Conserved Domains (1) summary
    cd00992
    Location:111 → 190
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein Strain
Heading Accession and Version

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