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CAPRIN2 caprin family member 2 [ Callorhinus ursinus (northern fur seal) ]

Gene ID: 112830090, updated on 15-Mar-2024

Summary

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Gene symbol
CAPRIN2
Gene description
caprin family member 2
See related
EnsemblRapid:ENSCURG00000007426
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinus ursinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
Orthologs
human mouse all
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Genomic context

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See CAPRIN2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020312893.1 (41709..88795)

NW_020312893.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112830163 Neighboring gene importin 8 Neighboring gene U4 spliceosomal RNA Neighboring gene proteasome subunit alpha type-1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020312893 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caprin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM326570v1 Primary Assembly

Genomic

  1. NW_020312893.1 Reference ASM326570v1 Primary Assembly

    Range
    41709..88795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025879763.1 → XP_025735548.1  caprin-2 isoform X9

    UniProtKB/TrEMBL
    A0A3Q7PPA5
    Conserved Domains (4) summary
    PTZ00121
    Location:264 → 497
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:385 → 675
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 875
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term

  2. XM_025879752.1 → XP_025735537.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7PPC4
    Conserved Domains (4) summary
    PTZ00449
    Location:385 → 675
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 875
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:939 → 1064
    C1q; C1q domain

  3. XM_025879764.1 → XP_025735549.1  caprin-2 isoform X10

    UniProtKB/TrEMBL
    A0A3Q7PP77
    Related
    ENSCURP00000011809.1, ENSCURT00000013815.1
    Conserved Domains (4) summary
    PTZ00121
    Location:264 → 497
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:385 → 675
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 874
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term

  4. XM_025879756.1 → XP_025735541.1  caprin-2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7R589
    Related
    ENSCURP00000011773.1, ENSCURT00000013767.1
    Conserved Domains (4) summary
    PTZ00449
    Location:385 → 675
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 874
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:938 → 1063
    C1q; C1q domain

  5. XM_025879757.1 → XP_025735542.1  caprin-2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q7PZT0
    Conserved Domains (5) summary
    PTZ00121
    Location:264 → 497
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:385 → 675
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 855
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:919 → 1044
    C1q; C1q domain

  6. XM_025879760.1 → XP_025735545.1  caprin-2 isoform X6

    UniProtKB/TrEMBL
    A0A3Q7PPC8
    Conserved Domains (4) summary
    PTZ00121
    Location:264 → 497
    PTZ00121; MAEBL; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 826
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:890 → 1015
    C1q; C1q domain

  7. XM_025879759.1 → XP_025735544.1  caprin-2 isoform X5

    UniProtKB/TrEMBL
    A0A3Q7PP72
    Conserved Domains (5) summary
    PTZ00121
    Location:264 → 497
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:385 → 683
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 840
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:904 → 1029
    C1q; C1q domain

  8. XM_025879768.1 → XP_025735553.1  caprin-2 isoform X13

    UniProtKB/TrEMBL
    A0A3Q7PPB0
    Related
    ENSCURP00000011832.1, ENSCURT00000013845.1
    Conserved Domains (4) summary
    PTZ00121
    Location:264 → 497
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:385 → 683
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 820
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term

  9. XM_025879761.1 → XP_025735546.1  caprin-2 isoform X7

    UniProtKB/TrEMBL
    A0A3Q7R594
    Conserved Domains (5) summary
    PTZ00121
    Location:264 → 497
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:385 → 699
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 791
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:855 → 980
    C1q; C1q domain

  10. XM_025879762.1 → XP_025735547.1  caprin-2 isoform X8

    UniProtKB/TrEMBL
    A0A3Q7PZT6
    Conserved Domains (5) summary
    PTZ00121
    Location:264 → 497
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:385 → 642
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 771
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:835 → 960
    C1q; C1q domain

  11. XM_025879758.1 → XP_025735543.1  caprin-2 isoform X4

    UniProtKB/TrEMBL
    A0A3Q7PPA0
    Conserved Domains (5) summary
    PTZ00121
    Location:239 → 472
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:360 → 650
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:34 → 409
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:536 → 850
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:914 → 1039
    C1q; C1q domain

  12. XM_025879766.1 → XP_025735551.1  caprin-2 isoform X12

    UniProtKB/TrEMBL
    A0A3Q7R599
    Conserved Domains (4) summary
    PTZ00121
    Location:118 → 351
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:239 → 529
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam12287
    Location:415 → 729
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:793 → 918
    C1q; C1q domain

  13. XM_025879755.1 → XP_025735540.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7PPC4
    Conserved Domains (4) summary
    PTZ00449
    Location:385 → 675
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 875
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:939 → 1064
    C1q; C1q domain

  14. XM_025879767.1 → XP_025735552.1  caprin-2 isoform X12

    UniProtKB/TrEMBL
    A0A3Q7R599
    Conserved Domains (4) summary
    PTZ00121
    Location:118 → 351
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:239 → 529
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam12287
    Location:415 → 729
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:793 → 918
    C1q; C1q domain

  15. XM_025879753.1 → XP_025735538.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7PPC4
    Conserved Domains (4) summary
    PTZ00449
    Location:385 → 675
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:59 → 434
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam12287
    Location:561 → 875
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam00386
    Location:939 → 1064
    C1q; C1q domain

  16. XM_025879765.1 → XP_025735550.1  caprin-2 isoform X11

    UniProtKB/TrEMBL
    A0A3Q7PPD3
    Conserved Domains (3) summary
    pfam00386
    Location:696 → 821
    C1q; C1q domain
    pfam12287
    Location:318 → 632
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    cl26511
    Location:21 → 254
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
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