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VTI1A vesicle transport through interaction with t-SNAREs 1A [ Canis lupus dingo (dingo) ]

Gene ID: 112672344, updated on 6-Jun-2024

Summary

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Gene symbol
VTI1A
Gene description
vesicle transport through interaction with t-SNAREs 1A
See related
Ensembl:ENSCAFG00020012023
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 28 NC_064270.1 (23685298..24042476)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 28 Unlocalized Scaffold NW_023365220.1 (24103988..24461234)

Chromosome 28 - NC_064270.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase long chain family member 5 Neighboring gene zinc finger DHHC-type palmitoyltransferase 6 Neighboring gene lysine-rich nucleolar protein 1-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene uncharacterized LOC112672345

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion with Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle transport through interaction with t-SNAREs homolog 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064270.1 Reference ASM325472v2

    Range
    23685298..24042476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035708145.2 → XP_035564038.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X9

    Conserved Domains (2) summary
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus
    cl22856
    Location:129 → 149
    SNARE; SNARE motif

  2. XM_049103578.1 → XP_048959535.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X4

  3. XM_025467216.3 → XP_025323001.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X7

    UniProtKB/TrEMBL
    A0A8C0KDN9
    Conserved Domains (2) summary
    cd15891
    Location:129 → 190
    SNARE_Vti1a; SNARE motif of Vti1b-like
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus

  4. XM_025467212.3 → XP_025322997.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X1

    UniProtKB/TrEMBL
    A0A8C0KDN9, A0A8C0NWP4, A0A8I3Q4G2
    Conserved Domains (2) summary
    cd15891
    Location:129 → 190
    SNARE_Vti1a; SNARE motif of Vti1b-like
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus

  5. XM_049103577.1 → XP_048959534.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X3

    UniProtKB/TrEMBL
    A0A8C0KDN9

  6. XM_035708144.2 → XP_035564037.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X7

    UniProtKB/TrEMBL
    A0A8C0KDN9
    Conserved Domains (2) summary
    cd15891
    Location:129 → 190
    SNARE_Vti1a; SNARE motif of Vti1b-like
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus

  7. XM_025467217.3 → XP_025323002.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X8

    UniProtKB/TrEMBL
    A0A8C0KDN9
    Related
    ENSCAFP00020014940.1
    Conserved Domains (2) summary
    cd15891
    Location:129 → 190
    SNARE_Vti1a; SNARE motif of Vti1b-like
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus

  8. XM_025467215.3 → XP_025323000.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X5

    UniProtKB/TrEMBL
    A0A8C0KDN9
    Conserved Domains (2) summary
    cd15891
    Location:129 → 190
    SNARE_Vti1a; SNARE motif of Vti1b-like
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus

  9. XM_035708147.2 → XP_035564040.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X12

    Conserved Domains (2) summary
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus
    cl22856
    Location:122 → 142
    SNARE; SNARE motif

  10. XM_049103579.1 → XP_048959536.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X6

  11. XM_035708146.2 → XP_035564039.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X11

    UniProtKB/TrEMBL
    A0A8C0KDN9, A0A8C0KFX8
    Conserved Domains (2) summary
    cd15891
    Location:122 → 183
    SNARE_Vti1a; SNARE motif of Vti1b-like
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus

  12. XM_049103580.1 → XP_048959537.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X10

    UniProtKB/TrEMBL
    A0A8C0KDN9, A0A8C0KFX8

  13. XM_025467213.3 → XP_025322998.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X2

    UniProtKB/TrEMBL
    A0A8C0KDN9, A0A8C0Z379
    Conserved Domains (2) summary
    cd15891
    Location:122 → 183
    SNARE_Vti1a; SNARE motif of Vti1b-like
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus

RNA

  1. XR_007406907.1 RNA Sequence

  2. XR_007406908.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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