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RBM27 RNA binding motif protein 27 [ Canis lupus dingo (dingo) ]

Gene ID: 112659915, updated on 15-Mar-2024

Summary

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Gene symbol
RBM27
Gene description
RNA binding motif protein 27
See related
Ensembl:ENSCAFG00020024931
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
21
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 2 NC_064244.1 (39246670..39323078)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 2 Unlocalized Scaffold NW_023365054.1 (40553026..40628408)

Chromosome 2 - NC_064244.1Genomic Context describing neighboring genes Neighboring gene PLAC8 like 1 Neighboring gene leucyl-tRNA synthetase 1 Neighboring gene uncharacterized LOC112659917 Neighboring gene POU class 4 homeobox 3 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064244.1 Reference ASM325472v2

    Range
    39246670..39323078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025447141.3 → XP_025302926.1  RNA-binding protein 27 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LK08, A0A8C0M3Y5, A0A8I3PNT0
    Related
    ENSCAFP00020032064.1
    Conserved Domains (5) summary
    PRK03918
    Location:806 → 933
    PRK03918; DNA double-strand break repair ATPase Rad50
    pfam00642
    Location:278 → 300
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cd12517
    Location:600 → 675
    RRM_RBM27; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 27 (RBM27)
    cl02562
    Location:7 → 72
    PWI; PWI domain
    cl17169
    Location:972 → 1014
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_025447143.3 → XP_025302928.1  RNA-binding protein 27 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LK08, A0A8C0MES5, A0A8I3PP32
    Conserved Domains (5) summary
    PRK03918
    Location:751 → 878
    PRK03918; DNA double-strand break repair ATPase Rad50
    pfam00642
    Location:278 → 300
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cd12517
    Location:545 → 620
    RRM_RBM27; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 27 (RBM27)
    cl02562
    Location:7 → 72
    PWI; PWI domain
    cl17169
    Location:917 → 959
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_025447142.3 → XP_025302927.1  RNA-binding protein 27 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LK08, A0A8C0RZT0
    Related
    ENSCAFP00020032068.1
    Conserved Domains (5) summary
    PRK03918
    Location:805 → 932
    PRK03918; DNA double-strand break repair ATPase Rad50
    pfam00642
    Location:277 → 299
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cd12517
    Location:599 → 674
    RRM_RBM27; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 27 (RBM27)
    cl02562
    Location:7 → 72
    PWI; PWI domain
    cl17169
    Location:971 → 1013
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_025447144.3 → XP_025302929.1  RNA-binding protein 27 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LK08
    Conserved Domains (5) summary
    PRK03918
    Location:750 → 877
    PRK03918; DNA double-strand break repair ATPase Rad50
    pfam00642
    Location:277 → 299
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cd12517
    Location:544 → 619
    RRM_RBM27; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 27 (RBM27)
    cl02562
    Location:7 → 72
    PWI; PWI domain
    cl17169
    Location:916 → 958
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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