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PAPLN papilin, proteoglycan like sulfated glycoprotein [ Canis lupus dingo (dingo) ]

Gene ID: 112657365, updated on 6-Jun-2024

Summary

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Gene symbol
PAPLN
Gene description
papilin, proteoglycan like sulfated glycoprotein
See related
Ensembl:ENSCAFG00020004479
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
31
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 8 NC_064250.1 (46709687..46744266)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 8 Unlocalized Scaffold NW_023365123.1 (46955601..46990160)

Chromosome 8 - NC_064250.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112658024 Neighboring gene presenilin 1 Neighboring gene L-lactate dehydrogenase B chain-like Neighboring gene akirin-1-like Neighboring gene NUMB endocytic adaptor protein Neighboring gene succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
papilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064250.1 Reference ASM325472v2

    Range
    46709687..46744266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049113660.1 → XP_048969617.1  papilin isoform X5

    UniProtKB/TrEMBL
    A0A8C0QIA2

  2. XM_025443332.3 → XP_025299117.1  papilin isoform X9

    UniProtKB/TrEMBL
    A0A8C0QIA2
    Related
    ENSCAFP00020005533.1
    Conserved Domains (9) summary
    smart00408
    Location:1057 → 1114
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:30 → 81
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:184 → 299
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam16626
    Location:806 → 900
    Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
    pfam00014
    Location:745 → 797
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam08686
    Location:1235 → 1267
    PLAC; PLAC (protease and lacunin) domain
    pfam19030
    Location:367 → 425
    TSP1_ADAMTS; Thrombospondin type 1 domain
    cd00096
    Location:1059 → 1066
    Ig; Ig strand B [structural motif]
    cl11960
    Location:1135 → 1219
    Ig; Immunoglobulin domain

  3. XM_049113665.1 → XP_048969622.1  papilin isoform X12

  4. XM_049113657.1 → XP_048969614.1  papilin isoform X1

    UniProtKB/TrEMBL
    A0A8C0PM54

  5. XM_049113661.1 → XP_048969618.1  papilin isoform X6

    UniProtKB/TrEMBL
    A0A8C0RRT4, A0A8P0P127

  6. XM_049113658.1 → XP_048969615.1  papilin isoform X3

    UniProtKB/TrEMBL
    A0A8C0RRT4, A0A8P0P127

  7. XM_025443327.3 → XP_025299112.1  papilin isoform X2

    UniProtKB/TrEMBL
    A0A8C0PM54
    Conserved Domains (9) summary
    smart00408
    Location:1159 → 1216
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:81 → 132
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:235 → 350
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam16626
    Location:908 → 1002
    Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
    pfam00014
    Location:847 → 899
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam08686
    Location:1337 → 1369
    PLAC; PLAC (protease and lacunin) domain
    pfam19030
    Location:440 → 498
    TSP1_ADAMTS; Thrombospondin type 1 domain
    cd00096
    Location:1161 → 1168
    Ig; Ig strand B [structural motif]
    cl11960
    Location:1237 → 1321
    Ig; Immunoglobulin domain

  8. XM_049113659.1 → XP_048969616.1  papilin isoform X4

    UniProtKB/TrEMBL
    A0A8C0PM54

  9. XM_025443331.3 → XP_025299116.1  papilin isoform X7

    UniProtKB/TrEMBL
    A0A8C0RRT4, A0A8P0P127
    Conserved Domains (9) summary
    smart00408
    Location:1108 → 1165
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:81 → 132
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:235 → 350
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam16626
    Location:857 → 951
    Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
    pfam00014
    Location:796 → 848
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam08686
    Location:1286 → 1318
    PLAC; PLAC (protease and lacunin) domain
    pfam19030
    Location:418 → 476
    TSP1_ADAMTS; Thrombospondin type 1 domain
    cd00096
    Location:1110 → 1117
    Ig; Ig strand B [structural motif]
    cl11960
    Location:1186 → 1270
    Ig; Immunoglobulin domain

  10. XM_049113662.1 → XP_048969619.1  papilin isoform X8

    UniProtKB/TrEMBL
    A0A8C0PM54

  11. XM_049113663.1 → XP_048969620.1  papilin isoform X10

    UniProtKB/TrEMBL
    A0A8C0PM54

  12. XM_049113664.1 → XP_048969621.1  papilin isoform X11

    UniProtKB/TrEMBL
    A0A8C0PM54

  13. XM_049113667.1 → XP_048969624.1  papilin isoform X14

  14. XM_049113666.1 → XP_048969623.1  papilin isoform X13

  15. XM_049113668.1 → XP_048969625.1  papilin isoform X15

Nucleotide Protein
Heading Accession and Version

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