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DDX21 DExD-box helicase 21 [ Canis lupus dingo (dingo) ]

Gene ID: 112651377, updated on 15-Mar-2024

Summary

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Gene symbol
DDX21
Gene description
DExD-box helicase 21
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 4 NC_064246.1 (20474777..20500486)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 4 Unlocalized Scaffold NW_023365084.1 (20447757..20473057)

Chromosome 4 - NC_064246.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125754949 Neighboring gene storkhead box 1 Neighboring gene DExD-box helicase 50 Neighboring gene ubiquitin-conjugating enzyme E2 N-like Neighboring gene kinesin family binding protein Neighboring gene uncharacterized LOC112651780 Neighboring gene nucleolar and spindle-associated protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar RNA helicase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064246.1 Reference ASM325472v2

    Range
    20474777..20500486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025434572.3 → XP_025290357.1  nucleolar RNA helicase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MUF8, A0A8C0NMM2, A0A8I3RSL8
    Conserved Domains (3) summary
    COG0513
    Location:163 → 589
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:619 → 711
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:199 → 400
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50

  2. XM_025434573.3 → XP_025290358.1  nucleolar RNA helicase 2 isoform X2

    Conserved Domains (3) summary
    COG0513
    Location:1 → 411
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:441 → 533
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    pfam05091
    Location:541 → 603
    eIF-3_zeta; Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Nucleotide Protein
Heading Accession and Version

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