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COL4A6 collagen type IV alpha 6 chain [ Canis lupus dingo (dingo) ]

Gene ID: 112649264, updated on 6-Jun-2024

Summary

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Gene symbol
COL4A6
Gene description
collagen type IV alpha 6 chain
See related
Ensembl:ENSCAFG00020005858
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See COL4A6 in Genome Data Viewer
Location:
chromosome: X
Exon count:
46
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) X NC_064281.1 (82028104..82319271, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) X Unlocalized Scaffold NW_023365275.1 (82395940..82686951, complement)

Chromosome X - NC_064281.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 10 Neighboring gene autophagy related 4A cysteine peptidase Neighboring gene elongation factor 1-alpha 1-like Neighboring gene protein BEX4-like Neighboring gene collagen type IV alpha 5 chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-6(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064281.1 Reference ASM325472v2

    Range
    82028104..82319271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025431469.3 → XP_025287254.1  collagen alpha-6(IV) chain isoform X6

    UniProtKB/TrEMBL
    A0A8C0SAL9, A0A8I3P806, A0A8P0P8G3
    Conserved Domains (2) summary
    pfam01391
    Location:1365 → 1423
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1546 → 1658
    C4; C-terminal tandem repeated domain in type 4 procollagen

  2. XM_049107520.1 → XP_048963477.1  collagen alpha-6(IV) chain isoform X5

    UniProtKB/TrEMBL
    A0A8C0S7P4, A0A8I3PAM8, A0A8P0NPC6

  3. XM_049107519.1 → XP_048963476.1  collagen alpha-6(IV) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0S7P4, A0A8C0S927, A0A8I3PAM8, A0A8P0NPC6

  4. XM_035712008.2 → XP_035567901.1  collagen alpha-6(IV) chain isoform X3

    UniProtKB/TrEMBL
    A0A8C0S7P4, A0A8C0YVD2, A0A8I3PAM8, A0A8P0NPC6
    Conserved Domains (2) summary
    pfam01391
    Location:650 → 706
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1560 → 1672
    C4; C-terminal tandem repeated domain in type 4 procollagen

  5. XM_025431468.3 → XP_025287253.1  collagen alpha-6(IV) chain isoform X4

    UniProtKB/TrEMBL
    A0A8C0S7P4, A0A8I3PAM8, A0A8P0NPC6
    Conserved Domains (3) summary
    pfam01391
    Location:1375 → 1433
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1556 → 1668
    C4; C-terminal tandem repeated domain in type 4 procollagen
    pfam09606
    Location:1149 → 1445
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  6. XM_025431467.3 → XP_025287252.1  collagen alpha-6(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0S7P4, A0A8C0S7W3, A0A8I3PAM8, A0A8P0NJE3, A0A8P0NPC6
    Related
    ENSCAFP00020008178.1
    Conserved Domains (3) summary
    pfam01391
    Location:1393 → 1451
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1574 → 1686
    C4; C-terminal tandem repeated domain in type 4 procollagen
    cl26247
    Location:1131 → 1228
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  7. XM_049107521.1 → XP_048963478.1  collagen alpha-6(IV) chain isoform X7

Nucleotide Protein
Heading Accession and Version

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