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RAVER2 ribonucleoprotein, PTB binding 2 [ Canis lupus dingo (dingo) ]

Gene ID: 112647171, updated on 15-Mar-2024

Summary

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Gene symbol
RAVER2
Gene description
ribonucleoprotein, PTB binding 2
See related
Ensembl:ENSCAFG00020018120
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 5 NC_064247.1 (45512896..45611656, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 5 Unlocalized Scaffold NW_023365093.1 (45818104..45910993, complement)

Chromosome 5 - NC_064247.1Genomic Context describing neighboring genes Neighboring gene proteasome maturation protein-like Neighboring gene uncharacterized LOC112647173 Neighboring gene Janus kinase 1 Neighboring gene cache domain containing 1 Neighboring gene 60S ribosomal protein L23a-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribonucleoprotein PTB-binding 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064247.1 Reference ASM325472v2

    Range
    45512896..45611656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025427985.3 → XP_025283770.1  ribonucleoprotein PTB-binding 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0L0H1, A0A8C0MDV1, A0A8C0RCJ9, A0A8P0P7P5
    Related
    ENSCAFP00020022948.1
    Conserved Domains (3) summary
    cd12664
    Location:73 → 142
    RRM1_RAVER2; RNA recognition motif 1 (RRM1) found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cd12666
    Location:146 → 222
    RRM2_RAVER2; RNA recognition motif 2 (RRM2) found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cd12668
    Location:232 → 329
    RRM3_RAVER2; RNA recognition motif 3 (RRM3) found found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)

  2. XM_025427986.3 → XP_025283771.1  ribonucleoprotein PTB-binding 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0RCJ9
    Conserved Domains (3) summary
    cd12664
    Location:73 → 142
    RRM1_RAVER2; RNA recognition motif 1 (RRM1) found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cd12666
    Location:146 → 222
    RRM2_RAVER2; RNA recognition motif 2 (RRM2) found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cd12668
    Location:232 → 329
    RRM3_RAVER2; RNA recognition motif 3 (RRM3) found found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)

  3. XM_025427984.3 → XP_025283769.1  ribonucleoprotein PTB-binding 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RCI9, A0A8C0S156
    Conserved Domains (3) summary
    cd12664
    Location:73 → 142
    RRM1_RAVER2; RNA recognition motif 1 (RRM1) found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cd12666
    Location:146 → 222
    RRM2_RAVER2; RNA recognition motif 2 (RRM2) found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cd12668
    Location:232 → 329
    RRM3_RAVER2; RNA recognition motif 3 (RRM3) found found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)

  4. XM_035717021.2 → XP_035572914.1  ribonucleoprotein PTB-binding 2 isoform X5

    UniProtKB/TrEMBL
    A0A8C0S156
    Conserved Domains (3) summary
    cd12666
    Location:22 → 98
    RRM2_RAVER2; RNA recognition motif 2 (RRM2) found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cd12668
    Location:108 → 205
    RRM3_RAVER2; RNA recognition motif 3 (RRM3) found found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cl17169
    Location:1 → 18
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_035717020.2 → XP_035572913.1  ribonucleoprotein PTB-binding 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C0MAK1, A0A8C0RCJ9, A0A8P0SPU3
    Conserved Domains (3) summary
    cd12664
    Location:73 → 142
    RRM1_RAVER2; RNA recognition motif 1 (RRM1) found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cd12666
    Location:146 → 222
    RRM2_RAVER2; RNA recognition motif 2 (RRM2) found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)
    cd12668
    Location:232 → 329
    RRM3_RAVER2; RNA recognition motif 3 (RRM3) found found in vertebrate ribonucleoprotein PTB-binding 2 (raver-2)

RNA

  1. XR_007410814.1 RNA Sequence

  2. XR_003128150.3 RNA Sequence

Nucleotide Protein
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