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RNF170 ring finger protein 170 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112413151, updated on 15-Mar-2024

Summary

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Gene symbol
RNF170
Gene description
ring finger protein 170
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020175192.1 (1612008..1638567)

NW_020175192.1Genomic Context describing neighboring genes Neighboring gene farnesyltransferase, CAAX box, subunit alpha Neighboring gene hook microtubule tethering protein 3 Neighboring gene THAP domain containing 1 Neighboring gene cholinergic receptor nicotinic alpha 6 subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020175192 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF170

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020175192.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    1612008..1638567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024765018.1 → XP_024620786.1  E3 ubiquitin-protein ligase RNF170 isoform X1

    UniProtKB/TrEMBL
    A0A341D1A2
    Conserved Domains (2) summary
    cd16553
    Location:88 → 131
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:204 → 240
    DUF1232; Protein of unknown function (DUF1232)

  2. XM_024765019.1 → XP_024620787.1  E3 ubiquitin-protein ligase RNF170 isoform X2

    UniProtKB/TrEMBL
    A0A341D428
    Conserved Domains (2) summary
    cd16553
    Location:87 → 130
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:203 → 239
    DUF1232; Protein of unknown function (DUF1232)

  3. XM_024765020.1 → XP_024620788.1  E3 ubiquitin-protein ligase RNF170 isoform X3

    UniProtKB/TrEMBL
    A0A341D1E9
    Conserved Domains (2) summary
    cd16553
    Location:3 → 46
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:119 → 155
    DUF1232; Protein of unknown function (DUF1232)

  4. XM_024765021.1 → XP_024620789.1  E3 ubiquitin-protein ligase RNF170 isoform X3

    UniProtKB/TrEMBL
    A0A341D1E9
    Conserved Domains (2) summary
    cd16553
    Location:3 → 46
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:119 → 155
    DUF1232; Protein of unknown function (DUF1232)
Nucleotide Protein
Heading Accession and Version

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