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RNPC3 RNA binding region (RNP1, RRM) containing 3 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112403633, updated on 15-Mar-2024

Summary

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Gene symbol
RNPC3
Gene description
RNA binding region (RNP1, RRM) containing 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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See RNPC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020173758.1 (8792121..8854867)

NW_020173758.1Genomic Context describing neighboring genes Neighboring gene hsc70-interacting protein pseudogene Neighboring gene uncharacterized LOC112403634 Neighboring gene amylase alpha 2A Neighboring gene NEDD8-conjugating enzyme UBE2F-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020173758 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U12 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA intronic binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020173758.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    8792121..8854867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024751217.1 → XP_024606985.1  RNA-binding protein 40 isoform X1

    UniProtKB/TrEMBL
    A0A341BWC3
    Conserved Domains (3) summary
    COG0724
    Location:330 → 511
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12238
    Location:28 → 100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:419 → 501
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

  2. XM_024751219.1 → XP_024606987.1  RNA-binding protein 40 isoform X1

    UniProtKB/TrEMBL
    A0A341BWC3
    Conserved Domains (3) summary
    COG0724
    Location:330 → 511
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12238
    Location:28 → 100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:419 → 501
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

  3. XM_024751221.1 → XP_024606989.1  RNA-binding protein 40 isoform X2

    UniProtKB/TrEMBL
    A0A341BYA7
    Conserved Domains (3) summary
    COG0724
    Location:329 → 510
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12238
    Location:28 → 100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:418 → 500
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

  4. XM_024751220.1 → XP_024606988.1  RNA-binding protein 40 isoform X2

    UniProtKB/TrEMBL
    A0A341BYA7
    Conserved Domains (3) summary
    COG0724
    Location:329 → 510
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12238
    Location:28 → 100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:418 → 500
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

RNA

  1. XR_003003946.1 RNA Sequence

  2. XR_003003947.1 RNA Sequence

  3. XR_003003948.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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