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ZC3H6 zinc finger CCCH-type containing 6 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112399027, updated on 15-Mar-2024

Summary

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Gene symbol
ZC3H6
Gene description
zinc finger CCCH-type containing 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020173116.1 (5322390..5375353, complement)

NW_020173116.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase I subunit B Neighboring gene tubulin tyrosine ligase Neighboring gene zinc finger CCCH-type containing 8 Neighboring gene transmembrane protein 87B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020173116 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020173116.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    5322390..5375353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024743980.1 → XP_024599748.1  zinc finger CCCH domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A341BDJ2
    Conserved Domains (2) summary
    smart00356
    Location:295 → 319
    ZnF_C3H1; zinc finger
    COG5084
    Location:269 → 343
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  2. XM_024743979.1 → XP_024599747.1  zinc finger CCCH domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A341BDJ4
    Conserved Domains (2) summary
    smart00356
    Location:295 → 319
    ZnF_C3H1; zinc finger
    COG5084
    Location:269 → 343
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  3. XM_024743981.1 → XP_024599749.1  zinc finger CCCH domain-containing protein 6 isoform X3

    UniProtKB/TrEMBL
    A0A341BC51
    Conserved Domains (2) summary
    smart00356
    Location:175 → 199
    ZnF_C3H1; zinc finger
    COG5084
    Location:149 → 223
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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