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ZC3H6 zinc finger CCCH-type containing 6 [ Homo sapiens (human) ]

Gene ID: 376940, updated on 8-Jul-2021

Summary

Official Symbol
ZC3H6provided by HGNC
Official Full Name
zinc finger CCCH-type containing 6provided by HGNC
Primary source
HGNC:HGNC:24762
See related
Ensembl:ENSG00000188177
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZC3HDC6
Expression
Ubiquitous expression in ovary (RPKM 3.2), thyroid (RPKM 2.4) and 25 other tissues See more
Orthologs
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Genomic context

See ZC3H6 in Genome Data Viewer
Location:
2q14.1
Exon count:
13
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (112275594..112340059)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (113033174..113097636)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene fibulin 7 Neighboring gene zinc finger CCCH-type containing 8 Neighboring gene CRISPRi-validated cis-regulatory element chr2.4107 Neighboring gene NADH:ubiquinone oxidoreductase subunit B4 pseudogene 6 Neighboring gene axin 2 pseudogene Neighboring gene RANBP2 like and GRIP domain containing 8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ16526, FLJ41410, FLJ45877, KIAA2035

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in negative regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in chromatin ISA
Inferred from Sequence Alignment
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger CCCH domain-containing protein 6
Names
zinc finger CCCH-type domain containing 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198581.3NP_940983.2  zinc finger CCCH domain-containing protein 6

    See identical proteins and their annotated locations for NP_940983.2

    Status: VALIDATED

    Source sequence(s)
    AC115115, AK131416, BM683817, DA334613
    Consensus CDS
    CCDS46393.1
    UniProtKB/Swiss-Prot
    P61129
    UniProtKB/TrEMBL
    Q6ZN12
    Related
    ENSP00000386764.1, ENST00000409871.6
    Conserved Domains (1) summary
    smart00356
    Location:303327
    ZnF_C3H1; zinc finger

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    112275594..112340059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006712519.3XP_006712582.1  zinc finger CCCH domain-containing protein 6 isoform X1

    Conserved Domains (1) summary
    smart00356
    Location:303327
    ZnF_C3H1; zinc finger
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