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TIGD6 tigger transposable element derived 6 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112395201, updated on 15-Mar-2024

Summary

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Gene symbol
TIGD6
Gene description
tigger transposable element derived 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020172589.1 (112907..114817)

NW_020172589.1Genomic Context describing neighboring genes Neighboring gene colony stimulating factor 1 receptor Neighboring gene HMG-box containing 3 Neighboring gene solute carrier family 26 member 2 Neighboring gene phosphodiesterase 6A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020172589 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: tigger transposable element-derived protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020172589.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    112907..114817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024738269.1 → XP_024594037.1  LOW QUALITY PROTEIN: tigger transposable element-derived protein 6

    UniProtKB/TrEMBL
    A0A341AXE7
    Conserved Domains (3) summary
    pfam03221
    Location:75 → 134
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:7 → 54
    HTH; Helix-turn-helix domains
    cl21549
    Location:210 → 377
    rve; Integrase core domain
Nucleotide Protein
Heading Accession and Version

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