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ZFP1 ZFP1 zinc finger protein [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112393521, updated on 15-Mar-2024

Summary

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Gene symbol
ZFP1
Gene description
ZFP1 zinc finger protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020185335.1 (3758202..3819037)

NW_020185335.1Genomic Context describing neighboring genes Neighboring gene zinc and ring finger 1 Neighboring gene transmembrane protein 203-like Neighboring gene lactate dehydrogenase D Neighboring gene transfer RNA glycine (anticodon ACC) Neighboring gene U6 spliceosomal RNA Neighboring gene 4-hydroxybenzoate polyprenyltransferase, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020185335 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables recombination hotspot binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020185335.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    3758202..3819037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024735802.1 → XP_024591570.1  zinc finger protein 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A341ANX0
    Conserved Domains (4) summary
    COG5048
    Location:266 → 403
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 47
    KRAB; KRAB box
    pfam13465
    Location:226 → 251
    zf-H2C2_2; Zinc-finger double domain

  2. XM_024735801.1 → XP_024591569.1  zinc finger protein 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A341ANX0
    Conserved Domains (4) summary
    COG5048
    Location:266 → 403
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 47
    KRAB; KRAB box
    pfam13465
    Location:226 → 251
    zf-H2C2_2; Zinc-finger double domain

  3. XM_024735803.1 → XP_024591571.1  zinc finger protein 1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A341ALE1
    Conserved Domains (2) summary
    COG5048
    Location:220 → 357
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:280 → 300
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_024735804.1 → XP_024591572.1  zinc finger protein 1 homolog isoform X3

    UniProtKB/TrEMBL
    A0A341AQS8
    Conserved Domains (3) summary
    COG5048
    Location:211 → 348
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 291
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:171 → 196
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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