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JADE3 jade family PHD finger 3 [ Desmodus rotundus (common vampire bat) ]

Gene ID: 112322476, updated on 30-Mar-2024

Summary

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Gene symbol
JADE3
Gene description
jade family PHD finger 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Desmodus rotundus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Desmodontinae; Desmodus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_02 current HLdesRot8A (GCF_022682495.1) X NC_071400.1 (67396816..67532183, complement)
101 previous assembly ASM294091v2 (GCF_002940915.1) Unplaced Scaffold NW_020093861.1 (3813066..3946801, complement)

Chromosome X - NC_071400.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S26-like Neighboring gene regucalcin Neighboring gene elongation factor 1-alpha 1-like Neighboring gene uncharacterized LOC128779967 Neighboring gene RP2 activator of ARL3 GTPase Neighboring gene 60S ribosomal protein L12-like Neighboring gene solute carrier family 9 member A7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Jade-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022682495.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HLdesRot8A Primary Assembly

Genomic

  1. NC_071400.1 Reference HLdesRot8A Primary Assembly

    Range
    67396816..67532183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045187542.2 → XP_045043477.1  protein Jade-3 isoform X2

    Conserved Domains (3) summary
    COG5141
    Location:138 → 509
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15671
    Location:255 → 365
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    pfam10513
    Location:88 → 177
    EPL1; Enhancer of polycomb-like

  2. XM_024580071.3 → XP_024435839.1  protein Jade-3 isoform X2

    Conserved Domains (3) summary
    COG5141
    Location:138 → 509
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15671
    Location:255 → 365
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    pfam10513
    Location:88 → 177
    EPL1; Enhancer of polycomb-like

  3. XM_053917184.1 → XP_053773159.1  protein Jade-3 isoform X2

  4. XM_053917183.1 → XP_053773158.1  protein Jade-3 isoform X2

  5. XM_045187538.2 → XP_045043473.1  protein Jade-3 isoform X1

  6. XM_045187539.1 → XP_045043474.1  protein Jade-3 isoform X2

    Conserved Domains (3) summary
    COG5141
    Location:138 → 509
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15671
    Location:255 → 365
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    pfam10513
    Location:88 → 177
    EPL1; Enhancer of polycomb-like

  7. XM_045187540.2 → XP_045043475.1  protein Jade-3 isoform X2

    Conserved Domains (3) summary
    COG5141
    Location:138 → 509
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15671
    Location:255 → 365
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    pfam10513
    Location:88 → 177
    EPL1; Enhancer of polycomb-like

  8. XM_045187541.1 → XP_045043476.1  protein Jade-3 isoform X2

    Conserved Domains (3) summary
    COG5141
    Location:138 → 509
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15671
    Location:255 → 365
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    pfam10513
    Location:88 → 177
    EPL1; Enhancer of polycomb-like
Nucleotide Protein
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