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ZKSCAN5 zinc finger with KRAB and SCAN domains 5 [ Desmodus rotundus (common vampire bat) ]

Gene ID: 112314949, updated on 30-Mar-2024

Summary

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Gene symbol
ZKSCAN5
Gene description
zinc finger with KRAB and SCAN domains 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Desmodus rotundus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Desmodontinae; Desmodus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current HLdesRot8A (GCF_022682495.1) 1 NC_071387.1 (133462672..133488001)
101 previous assembly ASM294091v2 (GCF_002940915.1) Unplaced Scaffold NW_020093431.1 (27787..47025, complement)

Chromosome 1 - NC_071387.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123480836 Neighboring gene zinc finger protein 394 Neighboring gene 40S ribosomal protein S6-like Neighboring gene U6 spliceosomal RNA Neighboring gene ubiquitin carboxyl-terminal hydrolase isozyme L3-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein with KRAB and SCAN domains 5
Names
Putative c2h2-type zn-finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022682495.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HLdesRot8A Primary Assembly

Genomic

  1. NC_071387.1 Reference HLdesRot8A Primary Assembly

    Range
    133462672..133488001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053910993.1 → XP_053766968.1  zinc finger protein with KRAB and SCAN domains 5 isoform X1

  2. XM_045204522.2 → XP_045060457.1  zinc finger protein with KRAB and SCAN domains 5 isoform X1

    Conserved Domains (5) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    COG5048
    Location:533 → 816
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:545 → 565
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:388 → 412
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:221 → 281
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  3. XM_024571577.3 → XP_024427345.1  zinc finger protein with KRAB and SCAN domains 5 isoform X1

    Conserved Domains (5) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    COG5048
    Location:533 → 816
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:545 → 565
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:388 → 412
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:221 → 281
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  4. XM_045204521.2 → XP_045060456.1  zinc finger protein with KRAB and SCAN domains 5 isoform X1

    Conserved Domains (5) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    COG5048
    Location:533 → 816
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:545 → 565
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:388 → 412
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:221 → 281
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  5. XM_024571571.3 → XP_024427339.1  zinc finger protein with KRAB and SCAN domains 5 isoform X2

    UniProtKB/TrEMBL
    K9INM0
    Conserved Domains (4) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    COG5048
    Location:460 → 743
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:472 → 492
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:315 → 339
    zf-H2C2_2; Zinc-finger double domain

  6. XM_045204529.2 → XP_045060464.1  zinc finger protein with KRAB and SCAN domains 5 isoform X3

  7. XM_045204528.2 → XP_045060463.1  zinc finger protein with KRAB and SCAN domains 5 isoform X3

Nucleotide Protein
Heading Accession and Version

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