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pigm phosphatidylinositol glycan anchor biosynthesis, class M [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112227849, updated on 18-Jun-2024

Summary

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Gene symbol
pigm
Gene description
phosphatidylinositol glycan anchor biosynthesis, class M
See related
Ensembl:ENSOTSG00005039476
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG29
Exon count:
5
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG29 NC_056457.1 (15962511..15968450, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 29 NC_037125.1 (18391442..18397411)

Linkage Group LG29 - NC_056457.1Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 12, like Neighboring gene uncharacterized LOC112227851 Neighboring gene leukocyte elastase inhibitor Neighboring gene zinc finger CCHC domain-containing protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-mannosyltransferase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056457.1 Reference Otsh_v2.0 Primary Assembly

    Range
    15962511..15968450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024392797.2 → XP_024248565.1  GPI mannosyltransferase 1

    UniProtKB/TrEMBL
    A0A8C8IQ19
    Related
    ENSOTSP00005083515.1, ENSOTST00005090650.2
    Conserved Domains (1) summary
    cl21590
    Location:10 → 415
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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Gene LinkOut

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