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slc3a1 solute carrier family 3 member 1 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112224574, updated on 18-Jun-2024

Summary

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Gene symbol
slc3a1
Gene description
solute carrier family 3 member 1
See related
Ensembl:ENSOTSG00005012390
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG25
Exon count:
10
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG25 NC_056453.1 (28183602..28192614)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 25 NC_037121.1 (26678297..26687308)

Linkage Group LG25 - NC_056453.1Genomic Context describing neighboring genes Neighboring gene leucine-rich pentatricopeptide repeat containing Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1Ba Neighboring gene prolyl endopeptidase like Neighboring gene calmodulin-lysine N-methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neutral and basic amino acid transport protein rBAT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056453.1 Reference Otsh_v2.0 Primary Assembly

    Range
    28183602..28192614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024388207.2 → XP_024243975.1  neutral and basic amino acid transport protein rBAT

    UniProtKB/TrEMBL
    A0A8C8LLL0
    Related
    ENSOTSP00005026373.1, ENSOTST00005028477.2
    Conserved Domains (2) summary
    cd11359
    Location:133 → 591
    AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
    pfam16028
    Location:82 → 140
    SLC3A2_N; Solute carrier family 3 member 2 N-terminus
Nucleotide Protein
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