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mrps11 mitochondrial ribosomal protein S11 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112160951, updated on 10-Jul-2024

Summary

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Gene symbol
mrps11
Gene description
mitochondrial ribosomal protein S11
See related
EnsemblRapid:ENSOMEG00005028000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See mrps11 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG3 NC_050514.1 (29071258..29074310, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096099.1 (6509968..6513007)

Linkage Group LG3 - NC_050514.1Genomic Context describing neighboring genes Neighboring gene prepronociceptin a Neighboring gene pyruvate dehydrogenase phosphatase regulatory subunit Neighboring gene mitochondrial ribosomal protein L46 Neighboring gene uncharacterized LOC112160357

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 5'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
28S ribosomal protein S11, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050514.1 Reference ASM292280v2 Primary Assembly

    Range
    29071258..29074310 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024295878.2 → XP_024151646.1  28S ribosomal protein S11, mitochondrial

    UniProtKB/TrEMBL
    A0A3B3CFC0
    Related
    ENSOMEP00005054280.1, ENSOMET00005067604.1
    Conserved Domains (1) summary
    cl00332
    Location:79 → 194
    Ribosomal_S11; Ribosomal protein S11
Nucleotide Protein Strain
Heading Accession and Version

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