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sh3bgrl2 SH3 domain binding glutamate-rich protein like 2 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112158524, updated on 10-Jul-2024

Summary

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Gene symbol
sh3bgrl2
Gene description
SH3 domain binding glutamate-rich protein like 2
See related
EnsemblRapid:ENSOMEG00005007540
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG24
Exon count:
4
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG24 NC_050535.1 (13843078..13850104)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096095.1 (10875630..10882648, complement)

Linkage Group LG24 - NC_050535.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 167 member Ab Neighboring gene lebercilin LCA5 Neighboring gene scavenger receptor cysteine-rich type 1 protein M130 Neighboring gene uncharacterized LOC112158195

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SH3 domain-binding glutamic acid-rich-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050535.1 Reference ASM292280v2 Primary Assembly

    Range
    13843078..13850104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024291958.2 → XP_024147726.1  SH3 domain-binding glutamic acid-rich-like protein 2

    UniProtKB/TrEMBL
    A0A3B3CBE8
    Related
    ENSOMEP00005016326.1, ENSOMET00005017989.1
    Conserved Domains (1) summary
    cd03030
    Location:2 → 97
    GRX_SH3BGR; Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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