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gata3 GATA binding protein 3 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157977, updated on 10-Jul-2024

Summary

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Gene symbol
gata3
Gene description
GATA binding protein 3
See related
EnsemblRapid:ENSOMEG00005004741
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG23
Exon count:
7
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG23 NC_050534.1 (21052640..21061344, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096075.1 (17764495..17773197, complement)

Linkage Group LG23 - NC_050534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118598063 Neighboring gene uncharacterized LOC118598065 Neighboring gene uncharacterized LOC112155744 Neighboring gene ATP synthase F1 subunit gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of epithelial cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor GATA-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050534.1 Reference ASM292280v2 Primary Assembly

    Range
    21052640..21061344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024291117.2 → XP_024146885.1  transcription factor GATA-3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3E0W0
    Related
    ENSOMEP00005009024.1, ENSOMET00005010349.1
    Conserved Domains (1) summary
    cd00202
    Location:311 → 362
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_036210277.1 → XP_036066170.1  transcription factor GATA-3 isoform X4

    Conserved Domains (1) summary
    cd00202
    Location:276 → 327
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  3. XM_024291134.1 → XP_024146902.1  transcription factor GATA-3 isoform X3

    Related
    ENSOMEP00005009023.1, ENSOMET00005010348.1
    Conserved Domains (1) summary
    cd00202
    Location:292 → 343
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  4. XM_024291126.1 → XP_024146894.1  transcription factor GATA-3 isoform X2

    Related
    ENSOMEP00005009025.1, ENSOMET00005010350.1
    Conserved Domains (1) summary
    cd00202
    Location:295 → 346
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  5. XM_036210276.1 → XP_036066169.1  transcription factor GATA-3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3E0W0
    Conserved Domains (1) summary
    cd00202
    Location:311 → 362
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein Strain
Heading Accession and Version

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