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cpm carboxypeptidase M [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157427, updated on 10-Jul-2024

Summary

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Gene symbol
cpm
Gene description
carboxypeptidase M
See related
EnsemblRapid:ENSOMEG00005008132
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG23
Exon count:
13
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG23 NC_050534.1 (21474778..21508758, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096075.1 (18187444..18220608, complement)

Linkage Group LG23 - NC_050534.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 243, mitochondrial b Neighboring gene cyclin D binding myb-like transcription factor 1 Neighboring gene DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) Neighboring gene uncharacterized LOC112157459 Neighboring gene thyrotropin-releasing hormone-degrading ectoenzyme Neighboring gene uncharacterized LOC112152906 Neighboring gene uncharacterized LOC112152899

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metallocarboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxypeptidase M

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050534.1 Reference ASM292280v2 Primary Assembly

    Range
    21474778..21508758 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024290150.2 → XP_024145918.1  carboxypeptidase M isoform X2

    Conserved Domains (2) summary
    cd11308
    Location:322 → 400
    Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
    cl11393
    Location:20 → 318
    Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

  2. XM_024290167.2 → XP_024145935.1  carboxypeptidase M isoform X3

    Related
    ENSOMEP00005017899.1, ENSOMET00005019668.1
    Conserved Domains (2) summary
    cd11308
    Location:322 → 400
    Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
    cl11393
    Location:20 → 318
    Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

  3. XM_024290159.2 → XP_024145927.1  carboxypeptidase M isoform X2

    Conserved Domains (2) summary
    cd11308
    Location:322 → 400
    Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
    cl11393
    Location:20 → 318
    Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

  4. XM_024290144.2 → XP_024145912.1  carboxypeptidase M isoform X1

    UniProtKB/TrEMBL
    A0A3B3CTV2
    Related
    ENSOMEP00005017898.1, ENSOMET00005019667.1
    Conserved Domains (2) summary
    cd11308
    Location:322 → 402
    Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
    cl11393
    Location:24 → 318
    Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins
Nucleotide Protein Strain
Heading Accession and Version

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