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yif1a Yip1 interacting factor homolog A (S. cerevisiae) [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112153187, updated on 10-Jul-2024

Summary

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Gene symbol
yif1a
Gene description
Yip1 interacting factor homolog A (S. cerevisiae)
See related
EnsemblRapid:ENSOMEG00005007646
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG10
Exon count:
10
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG10 NC_050521.1 (11104803..11119974)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096089.1 (14737572..14752553, complement)

Linkage Group LG10 - NC_050521.1Genomic Context describing neighboring genes Neighboring gene EGF containing fibulin extracellular matrix protein 2a Neighboring gene fibroblast growth factor (acidic) intracellular binding protein a Neighboring gene coiled-coil domain containing 85B Neighboring gene FOS like 1, AP-1 transcription factor subunit a Neighboring gene forkhead box protein N2 Neighboring gene atlastin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein YIF1A
Names
Yip1 interacting factor homolog A, membrane trafficking protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050521.1 Reference ASM292280v2 Primary Assembly

    Range
    11104803..11119974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024283169.2 → XP_024138937.1  protein YIF1A

    UniProtKB/TrEMBL
    A0A3B3CER0, A0A834CBD0
    Conserved Domains (1) summary
    pfam03878
    Location:68 → 302
    YIF1

  2. XM_024283167.2 → XP_024138935.1  protein YIF1A

    UniProtKB/TrEMBL
    A0A3B3CER0, A0A834CBD0
    Related
    ENSOMEP00005016674.1, ENSOMET00005018340.1
    Conserved Domains (1) summary
    pfam03878
    Location:68 → 302
    YIF1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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