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igbp1 immunoglobulin (CD79A) binding protein 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112153180, updated on 10-Jul-2024

Summary

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Gene symbol
igbp1
Gene description
immunoglobulin (CD79A) binding protein 1
See related
EnsemblRapid:ENSOMEG00005015188
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See igbp1 in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
3
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG10 NC_050521.1 (1519776..1521836, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096089.1 (21192546..21194606)

Linkage Group LG10 - NC_050521.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112153075 Neighboring gene abhydrolase domain containing 18 Neighboring gene transmembrane protein 129, E3 ubiquitin protein ligase Neighboring gene atonal bHLH transcription factor 8 Neighboring gene magnesium transporter protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase 2A binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
immunoglobulin-binding protein 1
Names
immunoglobulin binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050521.1 Reference ASM292280v2 Primary Assembly

    Range
    1519776..1521836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024283158.1 → XP_024138926.1  immunoglobulin-binding protein 1

    UniProtKB/TrEMBL
    A0A3B3BW77
    Related
    ENSOMEP00005034662.1, ENSOMET00005038361.1
    Conserved Domains (1) summary
    pfam04177
    Location:23 → 338
    TAP42; TAP42-like family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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