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tgs1 trimethylguanosine synthase 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112150707, updated on 10-Jul-2024

Summary

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Gene symbol
tgs1
Gene description
trimethylguanosine synthase 1
See related
EnsemblRapid:ENSOMEG00005010453
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG17
Exon count:
16
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG17 NC_050528.1 (27828219..27844014, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096074.1 (5722867..5738372)

Linkage Group LG17 - NC_050528.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112151314 Neighboring gene chemokine (C-C motif) receptor 12a Neighboring gene contactin associated protein 2b Neighboring gene transmembrane protein 68 Neighboring gene XK related 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap trimethylguanosine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 7-methylguanosine RNA capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in 7-methylguanosine cap hypermethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trimethylguanosine synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050528.1 Reference ASM292280v2 Primary Assembly

    Range
    27828219..27844014 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024279174.2 → XP_024134942.1  trimethylguanosine synthase isoform X1

    UniProtKB/TrEMBL
    A0A3B3DX62, A0A834EYM9
    Related
    ENSOMEP00005023307.1, ENSOMET00005025749.1
    Conserved Domains (1) summary
    pfam09445
    Location:616 → 767
    Methyltransf_15; RNA cap guanine-N2 methyltransferase

  2. XM_024279190.2 → XP_024134958.1  trimethylguanosine synthase isoform X2

    UniProtKB/TrEMBL
    A0A834EYM9
    Conserved Domains (1) summary
    pfam09445
    Location:523 → 674
    Methyltransf_15; RNA cap guanine-N2 methyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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