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znf131 zinc finger protein 131 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112148812, updated on 10-Jul-2024

Summary

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Gene symbol
znf131
Gene description
zinc finger protein 131
See related
EnsemblRapid:ENSOMEG00005013803
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG9
Exon count:
10
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG9 NC_050520.1 (9528994..9535893, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096084.1 (18884354..18891236)

Linkage Group LG9 - NC_050520.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3-like 3 like Neighboring gene NIM1 serine/threonine protein kinase a Neighboring gene selenoprotein P Neighboring gene growth hormone receptor a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 131

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050520.1 Reference ASM292280v2 Primary Assembly

    Range
    9528994..9535893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024276173.2 → XP_024131941.1  zinc finger protein 131 isoform X2

    UniProtKB/TrEMBL
    A0A3B3DYU8
    Conserved Domains (5) summary
    COG5048
    Location:295 → 348
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:247 → 267
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:409 → 427
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:25 → 130
    BTB; BTB/POZ domain
    pfam13465
    Location:329 → 354
    zf-H2C2_2; Zinc-finger double domain

  2. XM_024276175.2 → XP_024131943.1  zinc finger protein 131 isoform X3

    UniProtKB/TrEMBL
    A0A3B3DYU8
    Conserved Domains (5) summary
    COG5048
    Location:250 → 310
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:279 → 299
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:371 → 389
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:25 → 130
    BTB; BTB/POZ domain
    pfam13465
    Location:291 → 316
    zf-H2C2_2; Zinc-finger double domain

  3. XM_024276171.2 → XP_024131939.1  zinc finger protein 131 isoform X1

    UniProtKB/TrEMBL
    A0A3B3DYU8
    Conserved Domains (5) summary
    COG5048
    Location:308 → 361
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:260 → 280
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:422 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:25 → 130
    BTB; BTB/POZ domain
    pfam13465
    Location:342 → 367
    zf-H2C2_2; Zinc-finger double domain

  4. XM_024276172.2 → XP_024131940.1  zinc finger protein 131 isoform X1

    UniProtKB/TrEMBL
    A0A3B3DYU8
    Related
    ENSOMEP00005031509.1, ENSOMET00005034665.1
    Conserved Domains (5) summary
    COG5048
    Location:308 → 361
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:260 → 280
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:422 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:25 → 130
    BTB; BTB/POZ domain
    pfam13465
    Location:342 → 367
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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