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LOC112148556 cyclin-O [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112148556, updated on 10-Jul-2024

Summary

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Gene symbol
LOC112148556
Gene description
cyclin-O
See related
EnsemblRapid:ENSOMEG00005005231
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
ccno
Orthologs
human zebrafish all
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Genomic context

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See LOC112148556 in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
3
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG9 NC_050520.1 (6192510..6194229)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096084.1 (22226000..22227719, complement)

Linkage Group LG9 - NC_050520.1Genomic Context describing neighboring genes Neighboring gene iron-sulfur cluster assembly 1 Neighboring gene terminal uridylyl transferase 7 Neighboring gene uncharacterized LOC118599137 Neighboring gene multicilin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cell cycle phase transition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cyclin-dependent protein kinase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-O

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050520.1 Reference ASM292280v2 Primary Assembly

    Range
    6192510..6194229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024275763.2 → XP_024131531.1  cyclin-O isoform X1

    UniProtKB/TrEMBL
    A0A3B3DNQ3
    Related
    ENSOMEP00005010289.1, ENSOMET00005011627.1
    Conserved Domains (2) summary
    pfam00134
    Location:139 → 262
    Cyclin_N; Cyclin, N-terminal domain
    cl25647
    Location:139 → 388
    Cyclin_N2; N-terminal region of cyclin_N

  2. XM_024275764.1 → XP_024131532.1  cyclin-O isoform X2

    UniProtKB/TrEMBL
    A0A3B3C9Y2, A0A3B3DNQ3
    Conserved Domains (1) summary
    pfam00134
    Location:139 → 262
    Cyclin_N; Cyclin, N-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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