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dctn5 dynactin 5 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112146364, updated on 10-Jul-2024

Summary

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Gene symbol
dctn5
Gene description
dynactin 5
See related
EnsemblRapid:ENSOMEG00005007423
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG8 NC_050519.1 (17018974..17022379)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096082.1 (6749412..6752831, complement)

Linkage Group LG8 - NC_050519.1Genomic Context describing neighboring genes Neighboring gene trinucleotide repeat containing adaptor 6A Neighboring gene NADH:ubiquinone oxidoreductase subunit AB1b Neighboring gene HUWE1 associated protein modifying stress responses a Neighboring gene ubiquitin specific peptidase 7 (herpes virus-associated)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
dynactin subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050519.1 Reference ASM292280v2 Primary Assembly

    Range
    17018974..17022379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024272151.2 → XP_024127919.1  dynactin subunit 5

    UniProtKB/TrEMBL
    A0A3B3CMW0, A0A3B3DYG6
    Related
    ENSOMEP00005016041.1, ENSOMET00005017703.1
    Conserved Domains (1) summary
    cd03359
    Location:13 → 173
    LbH_Dynactin_5; Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping ...
Nucleotide Protein Strain
Heading Accession and Version

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